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| 1 | The Hardy Rubber Tree Genome Provides Insights into the Evolution of Polyisoprene Biosynthesis显示文摘Eucommia ulmoides,也叫的强壮的橡胶树,是一棵经济地重要的树;然而,它的染色体顺序的缺乏 ?限制基本生物研究和这植物种的应用研究。这里,我们在场它的 1.2-Gb 染色体的一个高质量的集会(支架 N50 ?=? 1.88 Mb ) 与至少 26 ? 为 E 的 723 预言的基因。ulmoides,顺序 Garryales 的首先定序的染色体,它用联合定序的 Illumina 的综合策略被获得,定序的 PacBio,和印射的 BioNano。作为到 lamiids 和 campanulids 的姐妹 taxon, E。ulmoides 经历了三倍由核心 eudicots 而是没有进一步整个染色体的复制分享了的一个古老的染色体 ? 在最后 1.25 亿年里。E。ulmoides 为涉及压力回答和第二等的代谢物的生合成的多重基因展出高表达式层次或基因数字扩大,它可以说明它的可观的环境适应性。与橡胶树(Hevea brasiliensis ) 相对照,它生产 cis 聚异式戊二我烯, E。ulmoides 演变综合经由 farnesyl diphosphate synthases (FPS ) 的长链的 trans 聚异式戊二我烯。而且, FPS 和橡胶延伸 factor/small 橡胶粒子蛋白质基因家庭从 H 独立地被扩展。brasiliensis 系。这些结果提供新卓见进 E. 的生物学 ? ulmoides 和聚异式戊二我烯生合成的起源。 | Ta-na Wuyun Lin Wang Huimin Liu Xuewen Wang Liangsheng Zhang Jeffrey L. Bennetzen Tiezhu Li Lirong Yang Panfeng Liu Lanying Du Lu Wang Mengzhen Huang Jun Qing Iili Zhu Wenquan Bao Hongguo Li Qingxin Du Jingle Zhu Hong Yang Shuguang Yang Hui Liu Hui Yue Jiang Hu Suoliang Yu Yu Tian Fan Liang Jingjing Hu Depeng Wang Ruiwen Gao Dejun Li Hongyan Du | 2018 | Molecular Plant2018，11，3： | 24 |
| 2 | Monitoring slope deformation using a 3-D laser image scanning system: a case study显示文摘An ILRIS-36D 3-D laser image scanning system was used to monitor the Anjialing strip mine slope on Pingshuo in Shanxi province. The basic working principles, performance indexes, features and data collection and processing methods are illus-trated. The point cloud results are analyzed in detail. The rescale range analysis method was used to analyze the deformation char-acteristics of the slope. The results show that the trend of slope displacement is stable and that the degree of landslide danger is low. This work indicates that 3-D laser image scanning can supply multi-parameter, high precision real time data over long distances. These data can be used to study the distortion of the slope quickly and accurately. | YUE Depeng WANG Jiping ZHOU Jinxing CHEN Xiaoxue REN Huijun | 2010 | Mining Science and Technology2010，20，6： | 10 |
| 3 | The N^6-adenine methylation in yeast genome profiled by single-molecule technology显示文摘The most common and abundant DNA modification is 5-methylcytosine(5mC),which has been well-established as an epigenetic mark regulating gene expression in eukaryotes(Jones,2012).Another DNA modification N^6-methyldeoxyadenosine(6mA),previously reported as a widespread DNA methylation in prokaryotes, | Zhe Liang Guoliang Yu Jingrong Liu Yuke Geng Jinghui Mao Depeng Wang Jiapeng Zhou Xiaofeng Gu | 2018 | Journal of Genetics and Genomics2018，45，4： | 3 |
| 4 | Taxonomic and functional variations in the microbial community during the upgrade process of a full-scale landfill leachate treatment plant-from conventional to partial nitrification-denitrification显示文摘Because of the low access to biodegradable organic substances used for denitrification,the partial nitrification-denitrification process has been considered as a low-cost,sustainable alternative for landfill leachate treatment.In this study,the process upgrade from conventional to partial nitrificationdenitrification was comprehensively investigated in a full-scale landfill leachate treatment plant(LLTP).The partial nitrification-denitrification system was successfully achieved through the optimizing dissolved oxygen and the external carbon source,with effluent nitrogen concentrations lower than 150 mg/L.Moreover,the upgrading process facilitated the enrichment of Nitrosomonas(abundance increased from 0.4%to 3.3%),which was also evidenced by increased abundance of amoA/B/C genes carried by Nitrosomonas.Although Nitrospira(accounting for 0.1%-0.6%)was found to stably exist in the reactor tank,considerable nitrite accumulation occurred in the reactor(reaching 98.8 mg/L),indicating high-efficiency of the partial nitrification process.Moreover,the abundance of Thauera,the dominant denitrifying bacteria responsible for nitrite reduction,gradually increased from 0.60%to 5.52%during the upgrade process.This process caused great changes in the microbial community,inducing continuous succession of heterotrophic bacteria accompanied by enhanced metabolic potentials toward organic substances.The results obtained in this study advanced our understanding of the operation of a partial nitrification-denitrification system and provided a technical case for the upgrade of currently existing full-scale LLTPs. | Binbin Sheng Depeng Wang Xianrong Liu Guangxing Yang Wu Zeng Yiqing Yang Fangang Meng | 2020 | Frontiers of Environmental Science & Engineering2020，14，6： | 3 |
| 5 | Automated pipeline for superalloy data by text mining显示文摘Data provides a foundation for machine learning,which has accelerated data-driven materials design.The scientific literature contains a large amount of high-quality,reliable data,and automatically extracting data from the literature continues to be a challenge.We propose a natural language processing pipeline to capture both chemical composition and property data that allows analysis and prediction of superalloys.Within 3 h,2531 records with both composition and property are extracted from 14,425 articles,coveringγ′solvus temperature,density,solidus,and liquidus temperatures.A data-driven model forγ′solvus temperature is built to predict unexplored Co-based superalloys with highγ′solvus temperatures within a relative error of 0.81%.We test the predictions via synthesis and characterization of three alloys.A web-based toolkit as an online open-source platform is provided and expected to serve as the basis for a general method to search for targeted materials using data extracted from the literature. | Weiren Wang Xue Jiang Shaohan Tian Pei Liu Depeng Dang Yanjing Su Turab Lookman Jianxin Xie | 2022 | npj Computational Materials2022，，1： | 2 |
| 6 | Hardware/software co-verification platform for EOS design显示文摘Ethernet over SDH/SONET (EOS) is a hotspot in today's data transmission technology for it combines the merits of both Ethernet and SDH/SONET. However, implementing an EOS system on a chip is complex and needs full verifications. This paper introduces our design of Hardware/Software co-verification platform for EOS design. The hardware platform contains a microprocessor board and an FPGA (Field Programmable Gate Array)-based verification board, and the corresponding software includes test benches running in FPGAs, controlling programs for the microprocessor and a console program with GUI (Graphical User Interface) interface for configuration, management and supervision. The design is cost-effective and has been successfully employed to verify several IP (Intellectual Property) blocks of our EOS chip. Moreover, it is flexible and can be applied as a general-purpose verification platform. | Wang Peng(王鹏) Jin Depeng Zeng Lieguang | 2005 | High Technology Letters2005，11，3： | 2 |
| 7 | A near-complete assembly of an Arabidopsis thaliana genome显示文摘The genome sequence of Arabidopsis thaliana,a widely adopted model species,has greatly expedited plant molecular biology research.Over 20 years after the first release of the genome sequence(Arabidopsis Genome Initiative,2000),there remains unresolved gap regions that are presumably composed of highly repetitive sequences,such as telomeres,centromeres,5S rDNA clusters,and nucleolar organizerregions(NORs)containing 45S rDNA. | Xueren Hou Depeng Wang Zhukuan Cheng Ying Wang Yuling Jiao | 2022 | Molecular Plant2022，15，8： | 2 |
| 8 | Design of 60GHz RF Transceiver in CMOS:Challenges and Recent Advances显示文摘With more than 40 years Moore scaling, the speed of CMOS transistors is around 100 GHz. Such fact makes it possible to realize mm-wave circuits in CMOS. However, with the target of achieving broadband and power-efficient operation, 60 GHz CMOS RF transceiver faces severe challenges. After reviewing the technology issues, regarding the 60 GHz applications, this paper discusses design challenges both from the system and the building block levels, and also presents some simulated or measured circuits results. | LI Lianming NIU Xiaokang CHEN Linhui CHAI Yuan ZHANG Tao SHI Jun WANG Aili LUO Ying HE Long CHENG Depeng LIU Nan CUI Tiejun YOU Xiaohu | 2014 | China Communications2014，11，6： | 2 |
| 9 | Recent advanced applications of ion-gel in ionic-gated transistor显示文摘Diversified regulation of electrons have received much attention to realize a multi-functional transistor,and it is crucial to have a considerable control over the charge carriers in transistors.Ionic gel,as the dielectric material in transistors,facilitates a large capacitance,and high induced-carrier concentrations.This review presents the recent progress in ionic-gated transistors(IGTs)that have good mechanical stability as well as high physical and chemical stability.We first briefly introduce the various applications of IGTs in sensors,neuromorphic transistors,organic transistor circuits,and health detection.Finally,the future perspectives of IGTs are discussed and some possible solutions to the challenges are also proposed. | Depeng Wang Shufang Zhao Ruiyang Yin Linlin Li Zheng Lou Guozhen Shen | 2021 | npj Flexible Electronics2021，5，1： | 2 |
| 10 | Co/N-doped carbon nanotube arrays grown on 2D MOFs-derived matrix for boosting the oxygen reduction reaction in alkaline and acidic media显示文摘The development of high-performance and cost-effective electrocatalysts towards oxygen reduction reaction(ORR) is of significant importance,but still challenging for the practical applications in related energy systems.ORR process typically suffers from sluggish kinetics,the exploration of ORR electrocatalyst thus requires elaborate design.Herein,an effective strategy is developed for growing Co/N-doped carbon nanotube arrays on 2D MOFs-derived matrix via the pyrolysis of Co/Zn metalorganic-framework(MOF) nanosheets.The Co/Zn-MOF nanosheets serve as both the self-template for the 2D carbonized framework morphology and C/N source for the in-situ growth of 1D N-doped carbon nanotubes.The constructed hie rarchical architecture effectively integrates the OD/1D Co nanoparticle/Ndoped carbon nanotube interface and 1D(nanotubes)/2D(nanosheets) junction into frameworks with highly exposed active surface,enhanced mass-transport kinetics and electrical conductivity.As a result,the designed composite exhibits superior ORR activity and durability in alkaline media as compared to commercial Pt/C.Particularly,it shows promising ORR performance with a half-wave potential of 0.78 V versus reversible hydrogen electrode and negligible activity attenuation after 5000 potential cycles in acidic electrolyte.The designed strategy can be extended to construct other MOFs-derived carbon matrixes with diverse hierarchical structures and provide an efficient avenue for searching highperformance electrocatalysts. | Shuao Wan Jiadong Wu Depeng Wang Huiling Liu Zhicheng Zhang Jianmin Ma Cheng Wang | 2021 | Chinese Chemical Letters2021，32，2： | 1 |
| 11 | Responses of the functional structure of soil microbial community to livestock grazing in the T ibetan alpine grassland显示文摘 | Yunfeng Yang Linwei Wu Qiaoyan Lin Mengting Yuan Depeng Xu Hao Yu Yigang Hu Jichuang Duan Xiangzhen Li Zhili He Kai Xue Joy van Nostrand Shiping Wang Jizhong Zhou | 2012 | Glob Change Biol2012，，2： | 1 |
| 12 | X-ray imager of 26-μm resolution achieved by perovskite assembly显示文摘Spatial resolution is an important criterion to evaluate the performance of a scintillation screen for X-ray imaging.Perovskite-based X-ray screen,usually made of powders or polycrystalline films,suffers from low spatial resolution(~200μm)due to the large thickness of scintillation layer despite of their compelling sensitivity to X-ray dose.In this work,a concentrated colloid of CsPbBr_(3)nanosheets was synthesized via a co-precipitation method at ambient condition.By drop casting,smooth scintillation screens of varied thickness were formed through self-assembly,which exhibited both high internal and external photoluminescence quantum yield(PL QY)(84.5%and 75.1%,respectively).The screen-based X-ray detector showed a high sensitivity down to 27 nGy/s,two orders of magnitude lower than the regular dose for medical diagnostics.Importantly,the screen of optimal thickness of 15μm showcased an unprecedented spatial resolution(26μm)when used for X-ray radiography,representing one order of magnitude improvement in perovskite community. | Zhaofen Wang Ruijia Sun Nianqiao Liu Huailin Fan Xun Hu Depeng Shen Yuhai Zhang Hong Liu | 2022 | Nano Research2022，15，3： | 1 |
| 13 | A panel of polymorphie EST-derived microsatellite loci for the small yellow croaker( Larimichthys polyactis )显示文摘 | Wang Xiuli Li Depeng Meng Xiangying | 2009 | Conservation Genetics2009，10，5： | 1 |
| 14 | Surface molecular serf-assembly strategy for TNT imprinting of poly- mer nanowire/nanotube arrays显示文摘 | Xie Chenggen Zhang Zhongping Wang Depeng | 2006 | Anal Chem2006，78，24： | 1 |
| 15 | The path to 5G:mmWave aspects显示文摘The wide spectrum and propagation characteristics over the air give mmWave communication unique advantages as well as design challenges for 5G applications.To increase the system speed,capacity,and coverage,there is a need for innovation in the RF system architecture,circuit,antenna,and package in terms of implementation opportunities and constraints.The discuss mmWave spectrum characteristics,circuits,RF system architecture,and their implementation issues are discussed.Moreover,the transmitter key components,i.e.,the receiver,antenna,and packaging are reviewed. | LI Lianming NIU Xiaokang CHAI Yuan CHEN Linhui ZHANG Tao CHENG Depeng XIA Haiyang WANG Jiangzhou CUI Tiejun YOU Xiaohu | 2016 | Journal of Communications and Information Networks2016，1，2： | 1 |
| 16 | Physical principle of wind erosion on sandy land surface in southern Beijing显示文摘The endangerment of aeolian sand is one of the most serious eco-environmental problems facing the southern suburb of Beijing. To control wind erosion is thus a matter of great urgency. This paper chooses typical land-use types, i.e., cultivated land, wild grassland, drifting sandy land, etc. based on the fixed experimental observation and quantitative analysis, to conduct studies on the principles and characteristics of aeolian activities and measures controlling wind erosion in Daxing District of Beijing. The results show that: the near ground wind velocity yielded the logarithmic distribution with height; there are significant differences among different ground cover roughness; there are significant differences in the corresponding friction velocities caused by different properties of the underlying surface; there are differences in the threshold wind velocities speed in different land use types; and there are minus exponential relations between the sediment discharge percentage and the height at a range of 0–20 cm air flow layer. Different land use types result in various degrees of coarse component. There is a significant exponential relation between sediment transport concentration and wind velocity. | YUE Depeng LIU Yongbing WANG diping LI Hailong CUI Weijia | 2006 | Journal of Geographical Sciences2006，16，4： | 1 |
| 17 | A biosensing system employing nanowell microelectrode arrays to record the intracellular potential of a single cardiomyocyte显示文摘Electrophysiological recording is a widely used method to investigate cardiovascular pathology,pharmacology and developmental biology.Microelectrode arrays record the electrical potential of cells in a minimally invasive and highthroughput way.However,commonly used microelectrode arays primarily employ planar microelectrodes and cannot work in applications that require a recording of the intracellular action potential of a single cell.In this study,we proposed a novel measuring method that is able to record the intracellular action potential of a single cardiomyocyte by using a nanowell patterned microelectrode array(NWMEA).The NWMEA consists of five nanoscale wells at the center of each circular planar microelectrode.Biphasic pulse electroporation was applied to the NWMEA to penetrate the cardiomyocyte membrane,and the intracellular action potential was continuously recorded.The intracellular potential recording of cardiomyocytes by the NWMEA measured a potential signal with a higher quality(213.76±25.85%),reduced noise root-mean-square(~33%),and higher signal-to-noise ratio(254.36±12.61%)when compared to those of the extracellular recording.Compared to previously reported nanopillar microelectrodes,the NWMEA could ensure single cell electroporation and acquire high-quality action potential of cardiomyocytes with reduced fabrication processes.This NWMEA-based biosensing system is a promising tool to record the intracellular action potential of a single cell to broaden the usage of microelectrode arrays in electrophysiological investigation. | Yuting Xiang Haitao Liu Wenjian Yang Zhongyuan xu Yue Wu Zhajian Tang Zhjing Zhu Zhiyong Zeng Depeng Wang Tianxing Wang Ning Hu Diming Zhang | 2022 | Microsystems & Nanoengineering2022，8，3： | 0 |
| 18 | Supported Cu/Ni Bimetallic Cluster Electrocatalysts Boost CO_(2) Reduction显示文摘Supported metal clusters with the integrated advantages of single-atom catalysts and conventional nanoparticles held great promise in the electrocatalytic carbon dioxide reduction(ECO_(2)R)operated at low overpotential and high current density.However,its precise synthesis and the understanding of synergisti-cally catalytic effects remain challenging.Herein,we report a facile method to synthesize the bimetallic Cu and Ni clusters anchored on porous carbon(Cu/Ni-NC)and achieve an enhanced ECO_(2)R.The aberration-corrected high-angle annular dark-field scanning transmission electron microscopy and synchrotron X-ray absorption spectroscopy were employed to verify the metal dispersion and the coordination of Cu/Ni clusters on NC.As a result of this route,the target Cu/Ni-NC exhibits excellent electrocatalytic performance including a stable 30 h electrolysis at 200 mA cm^(-2) with carbon monoxide Faradaic efficiency of∼95.1%using a membrane electrode assembly electrolysis cell.Combined with the in situ analysis of the surface-enhanced Fourier transform infrared spectroelectrochemistry,we propose that the synergistic effects between Ni and Cu can effectively promote the H_(2)O dissociation,thereby accelerate the hydrogenation of CO_(2)to*COOH and the overall reaction process. | Depeng Wang Jiazhi Wang Zhi Wang Ning Zhang Jianrong Zeng Haixia Zhong Xinbo Zhang | 2024 | Precision Chemistry2024，2，3： | 0 |
| 19 | Nanomechanical assay for ultrasensitive and rapid detection of SARS-CoV-2 based on peptide nucleic acid显示文摘The massive global spread of the COVID-19 pandemic makes the development of more effective and easily popularized assays critical.Here,we developed an ultrasensitive nanomechanical method based on microcantilever array and peptide nucleic acid(PNA)for the detection of severe acute respiratory syndrome-coronavirus-2(SARS-CoV-2)RNA.The method has an extremely low detection limit of 0.1 fM(105 copies/mL)for N-gene specific sequence(20 bp).Interestingly,it was further found that the detection limit of N gene(pharyngeal swab sample)was even lower,reaching 50 copies/mL.The large size of the N gene dramatically enhances the sensitivity of the nanomechanical sensor by up to three orders of magnitude.The detection limit of this amplification-free assay method is an order of magnitude lower than RT-PCR(500 copies/mL)that requires amplification.The non-specific signal in the assay is eliminated by the in-situ comparison of the array,reducing the false-positive misdiagnosis rate.The method is amplification-free and label-free,allowing for accurate diagnosis within 1 h.The strong specificity and ultrasensitivity allow single base mutations in viruses to be distinguished even at very low concentrations.Also,the method remains sensitive to fM magnitude lung cancer marker(miRNA-155).Therefore,this ultrasensitive,amplification-free and inexpensive assay is expected to be used for the early diagnosis of COVID-19 patients and to be extended as a broad detection tool. | Yu Wang Tianhao Yan Kainan Mei Depeng Rao Wenjie Wu Ye Chen Yongpei Peng Jianye Wang Shangquan Wu Qingchuan Zhang | 2023 | Nano Research2023，16，1： | 0 |
| 20 | A biosensing system using a multiparameter nonlinear dynamic analysis of cardiomyocyte beating for drug-induced arrhythmia recognition显示文摘Cardiovascular disease is the number one cause of death in humans.Therefore,cardiotoxicity is one of the most important adverse effects assessed by arrhythmia recognition in drug development.Recently,cell-based techniques developed for arhythmia recognition primarily employ linear methods such as time-domain analysis that detect and compare individual waveforms and thus fall short in some applications that require automated and efficient arrhythmia recognition from large datasets.We carried out the frst report to develop a biosensing system that integrated impedance measurement and multiparameter nonlinear dynamic algorithm(MNDA)analysis for druginduced arrhythmia recognition and classification.The biosensing system cultured cardiomyocytes as physiologically relevant models,used interdigitated electrodes to detect the mechanical beating of the cardiomyocytes,and employed MNDA analysis to recognize drug-induced arrhythmia from the cardiomyocyte beating recording.The best performing MNDA parameter,approximate entropy,enabled the system to recognize the appearance of sertindoleand norepinephrine-induced arrhythmia in the recording.The MNDA reconstruction in phase space enabled the system to classify the different arrhythmias and quantify the severity of arrhythmia.This new biosensing system utilizing MNDA provides a promising and alternative method for drug-induced arrhythmia recognition and classification in cardiological and pharmaceutical applications. | Hao Wang Yue Wu Quchao Zou Wenjian Yang Zhongyuan Xu Hao Dong Zhjing Zhu Depeng Wang Tanxing Wang Ning Hu Diming Zhang | 2022 | Microsystems & Nanoengineering2022，8，3： | 0 |
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