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| 1 | Integrated transcriptomic and metabolomic analyses of a wax deficient citrus mutant exhibiting jasmonic acid-mediated defense against fungal pathogens显示文摘Naturally,resistant crop germplasms are important resources for managing the issues of agricultural product safety and environment deterioration.We found a spontaneous mutant of‘Newhall’navel orange(Citrus sinensis Osbeck)(MT)with broad-spectrum protections against fungal pathogens in the orchard,postharvest-storage,and artificial inoculation conditions.To understand the defense mechanism of MT fruit,we constructed a genome-scale metabolic network that integrated metabolome and transcriptome datasets.The coordinated transcriptomic and metabolic data were enriched in two sub-networks,showing the decrease in very long chain fatty acid(by 41.53%)and cuticular wax synthesis(by 81.34%),and increase in the synthesis of jasmonic acid(JA)(by 95.23%)and JA-induced metabolites such as 5-dimethylnobietin(by 28.37%)in MT.Furthermore,cytological and biochemical analyses confirmed that the response to fungal infection in MT was independent of wax deficiency and was correlated with the levels of jasmonates,and the expression of plant defensin gene PDF1.2.Results of exogenous application of MeJA and JA inhibitors such as propyl gallate proved that JA-mediated defense contributes to the strong tolerance against pathogens in MT.Our results indicated that jasmonate biosynthesis and signaling are stimulated by the fatty acid redirection of MT,and participate in the tolerance of pathogenic fungi. | Yizhong He Jingwen Han Runsheng Liu Yuduan Ding Jinqiu Wang Li Sun Xiaoming Yang Yunliu Zeng Weiwei Wen Juan Xu Hongming Zhang Xiang Yan Zhaoxing Chen Zuliang Gu Hong Chen Huanqing Tang Xiuxin Deng Yunjiang Cheng | 2018 | Horticulture Research2018，5，1： | 8 |
| 2 | A draft sequence of the rice (Oryza sativa ssp. indica) genome显示文摘The sequence of the rice genome holds fundamental information for its biology, including physiology, genetics, development, and evolution, as well as information on many beneficial phenotypes of economic significance. Using a 'whole genome shotgun' approach, we have pro-duced a draft rice genome sequence of Oryza sativa ssp. in-dica, the major crop rice subspecies in China and many other regions of Asia. The draft genome sequence is constructed from over 4.3 million successful sequencing traces with an accumulative total length of 2214.9 Mb. The initial assembly of the non-redundant sequences reached 409.76 Mb in length, based on 3.30 million successful sequencing traces with a total length of 1797.4 Mb from an indica variant cultivar 93-11, giving an estimated coverage of 95.29% of the rice genome with an average base accuracy of higher than 99%. The coverage of the draft sequence, the randomness of the sequence distribution, and the consistency of BIG-ASSEM-BLER, a custom-designed software package | YU Jun, HU Songnian, WANG Jun,LI Songgang WONG Ka-Shu Gane, LIU Bin,DENG Yajun, DAI Li, ZHOU Yan,ZHANG Xiuqing, CAO Mengliang, LIU Jing,SUN Jiandong , TANG Jiabin, CHEN Yanjiong,HUANG Xiaobing, LIN Wei, YE Chen, TONG Wei,CONG Lijuan, GENG Jianing, HAN Yujun, LI Lin,LI Wei, HU Guangqiang, HUANG Xiangang,LI Wenjie, LI Jian, LIU Zhanwei, LI Long,LIU Jianping, Ql Qiuhui, LIU Jinsong, LI Li,WANG Xuegang, LU Hong, WU Tingling,ZHU Miao, Nl Peixiang, HAN Hua, DONG Wei,REN Xiaoyu, FENG Xiaoli, GUI Peng,LI Xianran, WANG Hao, XU Xin, ZHAI Wenxue,XU Zhao, ZHANG Jinsong, HE Sijie,ZHANG Jianguo, XU Jichen, ZHANG Kunlin,ZHENG Xianwu, DONG Jianhai, ZENG Wanyong,TAO Lin, CHEN Xuewei, HE Jun, LIU Daofeng,TIAN Wei, TIAN Chaoguang, XIA Hongai,LI Gang, GAO Hui, LI Ping, CHEN Wei ,WANG Xudong, ZHANG Yong, HU Jianfei,WANG Jing, LIU Song, YANG Jian,ZHANG Guangyu, XIONG Yuqing, LI Zhijie,MAO Long, ZHOU Chengshu, ZHU Zhen,CHEN Runsheng, HAO Bailin,ZHENG Weimou, CHEN Shouyi, QUO Wei,LI Guojie, LIU Siqi, HUANG Guyang,TAO Ming, WANG Jian, ZHU Lihuang,YUAN Longping& YANG HuanmingBeijing Genomics Institute/Center of Genomics & Bioinformatics, Chinese Academy of Sciences, Beijing 101300, China Hangzhou Genomics Institute/Institute of Bioinformatics of Zhejiang University/Key Laboratory of Bioinformatics of Zhejiang Province, Hangzhou 310007, China Institute of Genetics, Chinese Academy of Sciences, Beijing 100101, China National Hybrid Rice R & D Center, Changsha 410125, China Laboratory of Bioinformatics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China College of Life Sciences, Peking University, Beijing 100871, China Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 1Q0080, China Digital China Ltd., Beijing 100080, China Institute of Computing Technology, Chinese Academy of Sciences, Beijing 100080, China Medical College, Xi’an Jiaotong University, Xi’an 710061, ChinaThese authors contributed equally to this work.Corresponding author.Corresponden | 2001 | Chinese Science Bulletin2001，46，23： | 6 |
| 3 | TDP-43 regulates cancer-associated microRNAs显示文摘 | Xiaowei Chen Zhen Fan Warren McGee Mengmeng Chen Ruirui Kong Pushuai Wen Tengfei Xiao Xiaomin Chen Jianghong Liu Li Zhu Runsheng Chen Jane Y. Wu | 2018 | Protein & Cell2018，9，10： | 4 |
| 4 | Effects of humic acid on recoverability and fractal structure of alum-kaolin flocs显示文摘Particle surface characteristics, floc recoverability and fractal structure of alum-kaolin flocs were investigated using in situ particle image velocimetry (PIV) and microbalance with or without humic acid. Experimental results indicated that the zeta potential of kaolin particle surface after adsorption of humic acid was related with humic acid concentration and its acid-base buffering capacity. Adsorption of humic acid resulted in more negative electrophoresis on the particle surface. Coagulant dosages for particles to form flocs would increase with increasing humic concentration. PIV was used to evaluate floc structural fragmentation, floc surface erosion as well as recoverability after high shear. It was found that the floc size during the steady phase of growth was small, while the regrowing capability decreased in the presence of humic acid. The recoverability was closely related with floc breakage modes including floc structural fragmentation and floc surface erosion. The fractal dimensions of alum-kaolin flocs by mass-size method based on microbalance would decrease with increasing humic concentration. This study proved that humic acid had adverse influences on the performance of coagulation process. | Runsheng Zhong Xihui Zhang Feng Xiao Xiaoyan Li | 2011 | Journal of Environmental Sciences2011，23，5： | 4 |
| 5 | Experimental investigation on solar drying of salted greengages显示文摘 | Li Zhimin Zhong Hao Tang Runsheng | 2006 | Renewable Energy2006，31，6： | 1 |
| 6 | Parameters optimization based on the combination of localization and auto-calibration of SWAT model in a small watershed in Chinese Loess Plateau显示文摘 | Changbin Li Jiaguo Qi Zhaodong Feng Runsheng Yin Songbing Zou Feng Zhang | 2010 | Frontiers of Earth Science in China2010，，3： | 1 |
| 7 | Assessment of uncertainty in mean heat loss coefficient of all glass evacuated solar collector tube testing显示文摘 | Tang Runsheng Li Zhimin Zhong Hao etal | 2006 | Energy Conversion & Management2006，47，： | 1 |
| 8 | Geochemical Characteristics of the Tayuan Volcanic Rocks in the Daxinganling Metallogenic Belt显示文摘1 Introduction Daxinganling region is one of the most important nonferrous metal metallogenetic province(Wu et al.,2011;Li et al.,2014).The northern Daxinganling was a geological blank area in China formerly(Li et al.,2017).However,the region has a huge resource potential.Forty metal deposits have been found in the area recently。 | LI Chao Ren Tao HUANG Jianguo HAN Runsheng ZHOU Hongyang FENG Zhihong | 2017 | Acta Geologica Sinica(English Edition)2017，91，S1： | 1 |
| 9 | Towards green rural energy in Yunnan,China显示文摘 | ZHIMIN LI RUNSHENG TANG CHAOFENG XIA | 2005 | Renewable Energy2005，30，： | 1 |
| 10 | Optical perform- ance of inclined south-north single-axis tracked solar pan-els显示文摘 | Li Zhimin LiuXinyue Tang Runsheng | 2010 | Energy2010，35，6： | 1 |
| 11 | Parameters optimization based on the combination of localization and auto-calibration of SWAT model in a small watershed in Chinese Loess Plateau显示文摘 | Changbin Li Jiaguo Qi Zhaodong Feng Runsheng Yin Songbing Zou Feng Zhang | 2010 | Frontiers of Earth Science in China2010，，3： | 1 |
| 12 | Microvesicle‐Shuttled miR‐130b Reduces Fat Deposition in Recipient Primary Cultured Porcine Adipocytes by Inhibiting PPAR‐γ Expression显示文摘 | Shifeng Pan Xiaojing Yang Yimin Jia Runsheng Li Ruqian Zhao | 2014 | J. Cell. Physiol2014，，： | 1 |
| 13 | Optical performance of vertical single-axis tracked solar panels显示文摘 | Li Zhimin Liu Xinyue Tang Runsheng | 2011 | Renewable Energy2011，36，： | 1 |
| 14 | SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling显示文摘Small proteins specifically refer to proteins consisting of less than 100 amino acids translated from small open reading frames(s ORFs),which were usually missed in previous genome annotation.The significance of small proteins has been revealed in current years,along with the discovery of their diverse functions.However,systematic annotation of small proteins is still insufficient.Sm Prot was specially developed to provide valuable information on small proteins for scientific community.Here we present the update of Sm Prot,which emphasizes reliability of translated s ORFs,genetic variants in translated s ORFs,disease-specific s ORF translation events or sequences,and remarkably increased data volume.More components such as non-ATG translation initiation,function,and new sources are also included.Sm Prot incorporated638,958 unique small proteins curated from 3,165,229 primary records,which were computationally predicted from 419 ribosome profiling(Ribo-seq)datasets or collected from literature and other sources from 370 cell lines or tissues in 8 species(Homo sapiens,Mus musculus,Rattus norvegicus,Drosophila melanogaster,Danio rerio,Saccharomyces cerevisiae,Caenorhabditis elegans,and Escherichia coli).In addition,small protein families identified from human microbiomes were also collected.All datasets in Sm Prot are free to access,and available for browse,search,and bulk downloads at http://gffzz47cba05b3f0c4ad7hf5nnxoqv050w60cp.ffgz.tsg.suse.edu.cn/SmProt/. | Yanyan Li Honghong Zhou Xiaomin Chen Yu Zheng Quan Kang Di Hao Lili Zhang Tingrui Song Huaxia Luo Yajing Hao Runsheng Chen Peng Zhang Shunmin He | 2021 | Genomics, Proteomics & Bioinformatics2021，19，4： | 1 |
| 15 | Building Institutions for Markets: Experiences and Lessons from China’s Rural Forest Sector显示文摘 | Runsheng Yin Jintao Xu Zhou Li | 2003 | Environment Development and Sustainability (-)2003，，3： | 1 |
| 16 | Experimental investigation on solar drying of salted greengages显示文摘 | Li Zhimin Zhong Hao Tang Runsheng | 2006 | Renewable Energy2006，31，6： | 1 |
| 17 | Building Institutions for Markets: Experiences and Lessons from China’s Rural Forest Sector显示文摘 | Runsheng Yin Jintao Xu Zhou Li | 2003 | Environment Development and Sustainability (-)2003，，3： | 1 |
| 18 | Building Institutions for Markets: Experiences and Lessons from China’s Rural Forest Sector显示文摘 | Runsheng Yin Jintao Xu Zhou Li | 2003 | Environment Development and Sustainability (-)2003，，3： | 1 |
| 19 | Assessment of uncertainty in mean heat loss coefficient of all glass evacuated solar collector tube testing 显示文摘 | Tang Runsheng Li Zhimin Zhong Hao | 2006 | Energy Conversion & Management2006，47，： | 1 |
| 20 | Optical performance of vertical single-axis tracked solar panels显示文摘 | Li Zhimin Liu Xinyue Tang Runsheng | 2011 | Renewable Energy2011，36，1： | 1 |
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