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| 1 | Two gap-free reference genomes and a global view of the centromere architecture in rice显示文摘Rice(Oryza sativa),a major staple throughout the world and a model system for plant genomics and breeding,was the first crop genome sequenced almost two decades ago.However,reference genomes for all higher organisms to date contain gaps and missing sequences.Here,we report the assembly and analysis of gap-free reference genome sequences for two elite O.sativa xian/indica rice varieties,Zhenshan 97 and Minghui 63,which are being used as a model system for studying heterosis and yield.Gap-free reference genomes provide the opportunity for a global view of the structure and function of centromeres.We show that all rice centromeric regions share conserved centromere-specific satellite motifs with different copy numbers and structures.In addition,the similarity of CentO repeats in the same chromosome is higher than across chromosomes,supporting a model of local expansion and homogenization.Both genomes have over 395 non-TE genes located in centromere regions,of which∼41%are actively transcribed.Two large structural variants at the end of chromosome 11 affect the copy number of resistance genes between the two genomes.The availability of the two gap-free genomes lays a solid foundation for further understanding genome structure and function in plants and breeding climate-resilient varieties. | Jia-Ming Song Wen-Zhao Xie Shuo Wang Yi-Xiong Guo Dal-Hoe Koo Dave Kudrna Chenbo Gong Yicheng Huang Jia-Wu Feng Wenhui Zhang Yong Zhou Andrea Zuccolo Evan Long Seunghee Lee Jayson Talag Run Zhou Xi-Tong Zhu Daojun Yuan Joshua Udall Weibo Xie Rod AWing Qifa Zhang Jesse Poland Jianwei Zhang Ling-Ling Chen | 2021 | Molecular Plant2021，14，10： | 9 |
| 2 | Evolutionary dynamics of an ancient retrotransposon family provides insights into evolution of genome size in the genus Oryza显示文摘 | AMMIRAJU J S ZUCCOLO A YU Y | 2007 | The Plant Journal2007，52，2： | 1 |
| 3 | Complete genome sequence of Campylobacter jejuni strain S3 显示文摘 | Cooper KK Cooper MA Zuccolo A | 2011 | J Bacteriol2011，193，6： | 1 |
| 4 | Human gut microbiota in obesity and after gastric bypass显示文摘 | Zhang H DiBaise JK Zuccolo A | | 0，，： | 1 |
| 5 | Human gut microbita in obesity and after gastric bypass 显示文摘 | Zhang H DiBaise JK Zuccolo A | 2009 | Proc Natl Acad Sci USA2009，106，： | 1 |
| 6 | Phylogenetic analysis of the MS4A and TMEM176 gene families显示文摘 | Zuccolo J Bau J Childs SJ | 2010 | PLoS One2010，5，2： | 1 |
| 7 | Human gut microhiota inobesity and after gastric bypass显示文摘 | Zliang H DiBaise J Zuccolo A | 2009 | PNAS2009，106，7： | 1 |
| 8 | Neo-deterministic and probabilistic seismic hazard assessments:a comparison over the Italian territory显示文摘 | Zuccolo E Vaccari F Peresan A | | 0，，01： | 1 |
| 9 | Human gut microbiota in obesity and after gastric bypass显示文摘 | Zhang H Dibaise JK Zuccolo A | | 0，，： | 1 |
| 10 | Human gut micro- biota in obesity and after gastric bypass 显示文摘 | Zhang H Dibaise JK Zuccolo A | 2009 | Proc Natl Acad Sci U S A2009，106，7： | 1 |
| 11 | Neo-deterministic seismic hazard scenarios for north-eastern Ita-ly显示文摘 | Peresan A Zuccolo E Vaccari F | 2009 | Bollettino della SocietàGeologica Italiana2009，，01： | 1 |
| 12 | Association between alcohol and cardiovascular disease: Mendelian randomisation analysis based on individual participant data显示文摘 | Holmes MV Dale CE Zuccolo L | 2014 | BMJ2014，，： | 1 |
| 13 | The pathogenesis of dysplastic kidney in a urinary tract obstruction in the female fetal lamb显示文摘 | Kitagawa H Pringle KC Zuccolo J | 1999 | J Pediatr Surg1999，34，： | 1 |
| 14 | Human gut microbiota in obesity and after gastric bypass显示文摘 | Zhang H Di Baise JK Zuccolo A | 2009 | PNAS2009，106，7： | 1 |
| 15 | Human gut microbiota in obesity and er gaslric bypass显示文摘 | Zhang H DiBaise JK Zuccolo A | 2009 | Proc NatlAcad Sci USA2009，106，7： | 1 |
| 16 | The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity,domestication and genome evolution显示文摘 | The International Peach Genome Iniative Verde I Abbott A G Scalabrin S Jung S Shu S Marroni F Zhebentyayeva T Dettori M T Grimwood J Cattonaro F Zuccolo A Rossini L Jenkins J Vendramin E Meisel L A Decroocq V Sosinski B Prochnik S Mitros T Policriti A Cip | | 0，，： | 1 |
| 17 | Human gut micmbiotain obesity and after gastric bypass显示文摘 | Zhang H DiBaise JK Zuccolo A | 2009 | Proc Nat1Acad Sci USA2009，106，7： | 1 |
| 18 | Time trends and prognostic factors for survival from childhood cancer: a report from the Childhood Cancer Registry of Piedmont (Italy) 显示文摘 | Dama E Pastore G Mosso ML Maule MM Zuccolo L Magnani C Merletti F | 2006 | Eur J Pediatr2006，165，4： | 1 |
| 19 | Minimally invasive esophagectomy:thoracoscopic esophageal mobilization for esophageal cancerwith the patient in prone position显示文摘 | Petri R Zuccolo M Brizzolari M | 2012 | Surg Endosc2012，26，： | 1 |
| 20 | Minimally invasiveesophagectomy: thoracoscopic esophageal mobilization foresophageal cancer with the patient in prone position显示文摘 | Petri R Zuccolo M Brizzolari M | 2012 | Surg Endosc2012，26，4： | 1 |
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