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| 1 | Evolution and Domestication Footprints Uncovered from the Genomes of Coix显示文摘Coix lacryma-jobi,a plant species closely related to Zea and Sorghum,is an important food and medicinal crop in Asia.However,no reference genome of this species has been reported,and its exact phylogeny within the Andropogoneae remains unresolved.Here,we generated a high-quality genome assembly of coix comprising~1.73 Gb with 44485 predicted protein-coding genes.We found coix to be a typical diploid plant with an overall 1-to-1 syntenic relationship with the Sorghum genome,despite its drastic genome expansion(~2.3-fold)due mainly to the activity of transposable elements.Phylogenetic analysis revealed that coix diverged with sorghum~10.41 million years ago,which was~1.49 million years later than the divergence between sorghum and maize.Resequencing of 27 additional coix accessions revealed that they could be unambiguously separated into wild relatives and cultivars,and suggested that coix experienced a strong genetic bottleneck,resulting in the loss of about half of the genetic diversity during domestication,even though many traits have remained undomesticated.Our data not only provide novel comparative genomic and evolutionary insights into the Andropogoneae lineage,but also an important resource that will greatly benefit molecular breeding of this important crop. | Hongbing Liu Junpeng Shi Zexi Cai Yumin Huang Menglu Lv Huilong Du Qiang Gao Yi Zuo Zhaobin Dong Wei Huang Rui Qin Chengzhi Liang Jinsheng Lai Weiwei Jin | 2020 | Molecular Plant2020，13，2： | 4 |
| 2 | Amino acid permease 6 regulates grain protein content in maize显示文摘Grain protein content(GPC)is an indicator of cereal nutritional quality.Identification of genes involved in the regulation of GPC provides targets for molecular breeding for crop protein quality.We characterized a maize gene encoding the putative amino acid transporter ZmAAP6,a gene expressed mainly in immature seeds,especially in the basal endosperm transfer layer.Total protein and zein contents were decreased in ZmAAP6 null mutants and increased in ZmAAP6 overexpression(OE)lines,consistent with their changed in the size of protein bodies.Metabolic and transcriptomic analysis supported the regulatory role of ZmAAP6 in amino acid transportation.These results suggest that ZmAAP6 functions as a positive regulator of GPC in maize,shedding new light on the genetic basis of GPC regulation. | Tianyi Wang Yunfei Li Yumin Huang Xiaoming Zhao Zhaobin Dong Weiwei Jin Wei Huang | 2022 | The Crop Journal2022，10，6： | 0 |
| 3 | How far the wake of a wind farm can persist for?显示文摘With the increased penetration of wind energy in our nation’s energy portfolio, wind farms are placed in a way close to each other. Thus, their wakes have to be fully considered in the design and operation of a wind farm. In this study, we investigate the wake of a wind farm using large-eddy simulation with wind turbine rotor modelled by the actuator disk model. The simulated results show that the wake of a wind farm can persist for a long distance in its downstream. For the considered wind farm layout, the velocity in the wake recovers 95% of that of the undisturbed inflow at 55 rotor diameters downstream from its last row, suggesting that the wake of a wind farm should be fully considered in the optimal design and operation for its downstream wind farms. | Guodan Dong Zhaobin Li Jianhua Qin Xiaolei Yang | 2022 | Theoretical & Applied Mechanics Letters2022，12，1： | 0 |
| 4 | The Effect of Methylation Modification of MDD on the Expression of Key Genes in the Process of Saponin Synthesis in Eleutherococcus senticosus显示文摘Mevalonate pyrophosphate decarboxylase is a kind of key enzyme in the terpenoid synthesis pathway in Eleutherococcus senticosus.The results of bisulfite sequencing showed that there were three kinds of samples with a low(0.68%),medium(0.72%)and high(0.79%)DNA methylation ratio in the promoter of MDD in E.senticosus,respectively.The transcriptome sequencing results showed that the expression of MDD in E.senticosus was significantly up-regulated in the types with low DNA methylation ratios of MDD(P<0.05).There was a significant negative correlation between the saponin content in E.senticosus and the DNA methylation ratio of MDD promoter(P<0.05).The screening results of differentially expressed transcription factors among the three groups with different DNA methylation ratio showed that a total of 4 transcription factors could bind to 6 CpG sites.Protein-protein interaction analysis showed that E.senticosus MDD could interacted with other key enzymes in the process of terpenoid synthesis.In addition,it was found that the DNA methylation of MDD promoter was mainly regulated by DNA methyltransferase.These results demonstrated that under the action of DNA methyltransferase,the changes of DNA methylation of MDD promoter could regulate its own expression level by affecting the combination ability of transcription factors,and then affected the expression of other genes in terpenoid synthesis pathway.The synthesis and accumulation of saponins in E.senticosus was also changed. | Minghui Cui Limei Lin Jie Zhang Xin Song Shuo Wang Jing Dong Xuelei Zhao Yuehong Long Zhaobin Xing | 2022 | Phyton-International Journal of Experimental Botany2022，91，12： | 0 |
| 5 | Arabidopsis CAP1 mediates ammonium-regulated root hair growth by influencing vesicle trafficking and the cytoskeletal arrangement in root hair cells显示文摘Plant root hairs are essential for mineral and water absorption,which possess sophisticated sensory mechanisms to allow them to respond to different environmental signals.Ammonium(NH^(+))is a major form of nitrogen in the soil.NH^(+)can influence the root system architecture,such as root hair growth(Liu and von Wir en,2017). | Juanjuan Yu Xiaonan Ma Lianlian Wang Nannan Dong Kai Wang Qingye You Yifei Xu Chong Wang Zhiping Dong Zhaobin Shi Shaojun Dai Ling Bai Chun-Peng Song | 2022 | Journal of Genetics and Genomics2022，49，10： | 0 |
| 6 | Striking a growth–defense balance:Stress regulators that function in maize development显示文摘Maize(Zea mays)cultivation is strongly affected by both abiotic and biotic stress,leading to reduced growth and productivity.It has recently become clear that regulators of plant stress responses,including the phytohormones abscisic acid(ABA),ethylene(ET),and jasmonic acid(JA),together with reactive oxygen species(ROS),shape plant growth and development.Beyond their well established functions in stress responses,these molecules play crucial roles in balancing growth and defense,which must be finely tuned to achieve high yields in crops while maintaining some level of defense.In this review,we provide an in-depth analysis of recent research on the developmental functions of stress regulators,focusing specifically on maize.By unraveling the contributions of these regulators to maize development,we present new avenues for enhancing maize cultivation and growth while highlighting the potential risks associated with manipulating stress regulators to enhance grain yields in the face of environmental challenges. | Shiyi Xie Hongbing Luo Wei Huang Weiwei Jin Zhaobin Dong | 2024 | Journal of Integrative Plant Biology2024，66，3： | 0 |
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